CAFE

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see CAFE.

Chromosmal Aberrations Finder in Expression data


Bioconductor version: 3.17

Detection and visualizations of gross chromosomal aberrations using Affymetrix expression microarrays as input

Author: Sander Bollen

Maintainer: Sander Bollen <sander.h.bollen at gmail.com>

Citation (from within R, enter citation("CAFE")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CAFE")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CAFE")
Manual PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews GeneExpression, GeneSetEnrichment, Microarray, OneChannel, Software
Version 1.36.0
In Bioconductor since BioC 2.14 (R-3.1) (10 years)
License GPL-3
Depends R (>= 2.10), biovizBase, GenomicRanges, IRanges, ggbio
Imports affy, ggplot2, annotate, grid, gridExtra, tcltk, Biobase
System Requirements
URL
See More
Suggests RUnit, BiocGenerics, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CAFE_1.36.0.tar.gz
Windows Binary CAFE_1.36.0.zip
macOS Binary (x86_64) CAFE_1.36.0.tgz
macOS Binary (arm64) CAFE_1.36.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/CAFE
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CAFE
Bioc Package Browser https://code.bioconductor.org/browse/CAFE/
Package Short Url https://bioconductor.org/packages/CAFE/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.17 Source Archive