ndexr
This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see ndexr.
NDEx R client library
Bioconductor version: 3.16
This package offers an interface to NDEx servers, e.g. the public server at http://ndexbio.org/. It can retrieve and save networks via the API. Networks are offered as RCX object and as igraph representation.
Author: Florian Auer <florian.auer at informatik.uni-augsburg.de>, Frank Kramer <frank.kramer at informatik.uni-augsburg.de>, Alex Ishkin <aleksandr.ishkin at thomsonreuters.com>, Dexter Pratt <depratt at ucsc.edu>
Maintainer: Florian Auer <florian.auer at informatik.uni-augsburg.de>
citation("ndexr")):
Installation
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ndexr")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ndexr")| NDExR Vignette | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | DataImport, Network, Pathways, Software |
| Version | 1.20.1 |
| In Bioconductor since | BioC 3.6 (R-3.4) (6.5 years) |
| License | BSD_3_clause |
| Depends | RCX |
| Imports | httr, jsonlite, plyr, tidyr |
| System Requirements | |
| URL | https://github.com/frankkramer-lab/ndexr |
| Bug Reports | https://github.com/frankkramer-lab/ndexr/issues |
See More
| Suggests | BiocStyle, testthat, knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | netgsa |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ndexr_1.20.1.tar.gz |
| Windows Binary | ndexr_1.20.1.zip |
| macOS Binary (x86_64) | ndexr_1.20.1.tgz |
| macOS Binary (arm64) | ndexr_1.20.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ndexr |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ndexr |
| Bioc Package Browser | https://code.bioconductor.org/browse/ndexr/ |
| Package Short Url | https://bioconductor.org/packages/ndexr/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.16 | Source Archive |