mumosa
This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see mumosa.
Multi-Modal Single-Cell Analysis Methods
Bioconductor version: 3.16
Assorted utilities for multi-modal analyses of single-cell datasets. Includes functions to combine multiple modalities for downstream analysis, perform MNN-based batch correction across multiple modalities, and to compute correlations between assay values for different modalities.
Author: Aaron Lun [aut, cre]
Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>
citation("mumosa")):
Installation
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("mumosa")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("mumosa")| Overview | HTML | R Script |
| Reference Manual |
Details
| biocViews | ImmunoOncology, RNASeq, SingleCell, Software |
| Version | 1.6.0 |
| In Bioconductor since | BioC 3.13 (R-4.1) (3 years) |
| License | GPL-3 |
| Depends | SingleCellExperiment |
| Imports | stats, utils, methods, igraph, Matrix, BiocGenerics, BiocParallel, IRanges, S4Vectors, DelayedArray, DelayedMatrixStats, SummarizedExperiment, BiocNeighbors, BiocSingular, ScaledMatrix, beachmat, scuttle, metapod, scran, batchelor, uwot |
| System Requirements | |
| URL | http://bioconductor.org/packages/mumosa |
| Bug Reports | https://support.bioconductor.org/ |
See More
| Suggests | testthat, knitr, BiocStyle, rmarkdown, scater, bluster, DropletUtils, scRNAseq |
| Linking To | |
| Enhances | |
| Depends On Me | OSCA.advanced |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | mumosa_1.6.0.tar.gz |
| Windows Binary | mumosa_1.6.0.zip (64-bit only) |
| macOS Binary (x86_64) | mumosa_1.6.0.tgz |
| macOS Binary (arm64) | mumosa_1.6.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/mumosa |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/mumosa |
| Bioc Package Browser | https://code.bioconductor.org/browse/mumosa/ |
| Package Short Url | https://bioconductor.org/packages/mumosa/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.16 | Source Archive |