illuminaio
This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see illuminaio.
Parsing Illumina Microarray Output Files
Bioconductor version: 3.16
Tools for parsing Illumina's microarray output files, including IDAT.
Author: Keith Baggerly [aut], Henrik Bengtsson [aut], Kasper Daniel Hansen [aut, cre], Matt Ritchie [aut], Mike L. Smith [aut], Tim Triche Jr. [ctb]
Maintainer: Kasper Daniel Hansen <kasperdanielhansen at gmail.com>
citation("illuminaio")):
Installation
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("illuminaio")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("illuminaio")| Description of Encrypted IDAT Format | ||
| Introduction to illuminaio | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport, Infrastructure, Microarray, ProprietaryPlatforms, Software |
| Version | 0.40.0 |
| In Bioconductor since | BioC 2.12 (R-3.0) (11 years) |
| License | GPL-2 |
| Depends | |
| Imports | base64 |
| System Requirements | |
| URL | https://github.com/HenrikBengtsson/illuminaio |
| Bug Reports | https://github.com/HenrikBengtsson/illuminaio/issues |
See More
| Suggests | RUnit, BiocGenerics, IlluminaDataTestFiles(>= 1.0.2), BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | EGSEA123, normalize450K, RnBeads, wateRmelon |
| Imports Me | beadarray, bigmelon, ChAMP, crlmm, ENmix, methylumi, minfi, sesame |
| Suggests Me | limma |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | illuminaio_0.40.0.tar.gz |
| Windows Binary | illuminaio_0.40.0.zip |
| macOS Binary (x86_64) | illuminaio_0.40.0.tgz |
| macOS Binary (arm64) | illuminaio_0.40.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/illuminaio |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/illuminaio |
| Bioc Package Browser | https://code.bioconductor.org/browse/illuminaio/ |
| Package Short Url | https://bioconductor.org/packages/illuminaio/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.16 | Source Archive |