MSstatsConvert
This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see MSstatsConvert.
Import Data from Various Mass Spectrometry Signal Processing Tools to MSstats Format
Bioconductor version: 3.16
MSstatsConvert provides tools for importing reports of Mass Spectrometry data processing tools into R format suitable for statistical analysis using the MSstats and MSstatsTMT packages.
Author: Mateusz Staniak [aut, cre], Meena Choi [aut], Ting Huang [aut], Olga Vitek [aut]
Maintainer: Mateusz Staniak <mtst at mstaniak.pl>
citation("MSstatsConvert")):
Installation
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MSstatsConvert")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MSstatsConvert")| Working with MSstatsConvert | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport, MassSpectrometry, Proteomics, QualityControl, Software |
| Version | 1.8.3 |
| In Bioconductor since | BioC 3.12 (R-4.0) (3.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 4.0) |
| Imports | data.table, log4r, methods, checkmate, utils, stringi |
| System Requirements | |
| URL |
See More
| Suggests | tinytest, covr, knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | MSstats, MSstatsLiP, MSstatsPTM, MSstatsShiny, MSstatsTMT |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | MSstatsConvert_1.8.3.tar.gz |
| Windows Binary | MSstatsConvert_1.8.3.zip (64-bit only) |
| macOS Binary (x86_64) | MSstatsConvert_1.8.3.tgz |
| macOS Binary (arm64) | MSstatsConvert_1.8.3.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MSstatsConvert |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MSstatsConvert |
| Bioc Package Browser | https://code.bioconductor.org/browse/MSstatsConvert/ |
| Package Short Url | https://bioconductor.org/packages/MSstatsConvert/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.16 | Source Archive |