--- title: "An R package for Reactome Pathway Analysis" author: - name: Guangchuang Yu email: guangchuangyu@gmail.com affiliation: Department of Bioinformatics, School of Basic Medical Sciences, Southern Medical University date: "`r Sys.Date()`" biblio-style: apalike output: prettydoc::html_pretty: toc: true theme: cayman highlight: github pdf_document: toc: true vignette: > %\VignetteIndexEntry{An R package for Reactome Pathway Analysis} %\VignetteEngine{knitr::rmarkdown} %\VignetteDepends{org.Hs.eg.db} %\usepackage[utf8]{inputenc} %\VignetteEncoding{UTF-8} --- ```{r style, echo=FALSE, results="asis", message=FALSE} knitr::opts_chunk$set(tidy = FALSE, warning = FALSE, message = FALSE) ``` ```{r echo=FALSE, results='hide', message=FALSE} CRANpkg <- function (pkg) { cran <- "https://CRAN.R-project.org/package" fmt <- "[%s](%s=%s)" sprintf(fmt, pkg, cran, pkg) } Biocpkg <- function (pkg) { sprintf("[%s](http://bioconductor.org/packages/%s)", pkg, pkg) } library(org.Hs.eg.db) library(DOSE) library(ReactomePA) ``` # Vignette Please go to for the full vignette. # Citation If you use `r Biocpkg("ReactomePA")` [@yu_reactomepa_2016] in published research, please cite: __*G Yu*__, QY He^\*^. ReactomePA: an R/Bioconductor package for reactome pathway analysis and visualization. __*Molecular BioSystems*__ 2016, 12(2):477-479. doi: [10.1039/C5MB00663E](http://dx.doi.org/10.1039/C5MB00663E) # Need help? If you have questions/issues, please post to [Bioconductor support site](https://support.bioconductor.org/) and tag your post with *ReactomePA*.