scp
This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see scp.
Mass Spectrometry-Based Single-Cell Proteomics Data Analysis
Bioconductor version: 3.15
Utility functions for manipulating, processing, and analyzing mass spectrometry-based single-cell proteomics (SCP) data. The package is an extension to the 'QFeatures' package designed for SCP applications.
Author: Christophe Vanderaa [aut, cre] 
, Laurent Gatto [aut]
Maintainer: Christophe Vanderaa <christophe.vanderaa at uclouvain.be>
citation("scp")):
Installation
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("scp")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("scp")| Advanced usage of `scp` | HTML | R Script |
| Load data using readSCP | HTML | R Script |
| QFeatures in a nutshell | HTML | R Script |
| Single Cell Proteomics data processing and analysis | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | CellBasedAssays, GeneExpression, MassSpectrometry, Preprocessing, Proteomics, SingleCell, Software |
| Version | 1.6.0 |
| In Bioconductor since | BioC 3.12 (R-4.0) (3.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 4.0), QFeatures(>= 1.3.5) |
| Imports | methods, stats, utils, SingleCellExperiment, SummarizedExperiment, MultiAssayExperiment, MsCoreUtils, matrixStats, S4Vectors, dplyr, magrittr, rlang |
| System Requirements | |
| URL | https://UCLouvain-CBIO.github.io/scp |
| Bug Reports | https://github.com/UCLouvain-CBIO/scp/issues |
See More
| Suggests | testthat, knitr, BiocStyle, rmarkdown, patchwork, ggplot2, impute, scater, sva, preprocessCore, vsn, uwot |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | scpdata |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | scp_1.6.0.tar.gz |
| Windows Binary | scp_1.6.0.zip |
| macOS Binary (x86_64) | scp_1.6.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/scp |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/scp |
| Bioc Package Browser | https://code.bioconductor.org/browse/scp/ |
| Package Short Url | https://bioconductor.org/packages/scp/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.15 | Source Archive |