ptairMS

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see ptairMS.

Pre-processing PTR-TOF-MS Data


Bioconductor version: 3.15

This package implements a suite of methods to preprocess data from PTR-TOF-MS instruments (HDF5 format) and generates the 'sample by features' table of peak intensities in addition to the sample and feature metadata (as a singl

Author: camille Roquencourt [aut, cre]

Maintainer: camille Roquencourt <camille.roquencourt at hotmail.fr>

Citation (from within R, enter citation("ptairMS")):

Installation

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ptairMS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ptairMS")
ptaiMS: Processing and analysis of PTR-TOF-MS data HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Alignment, MassSpectrometry, Metabolomics, PeakDetection, Preprocessing, Software
Version 1.4.1
In Bioconductor since BioC 3.13 (R-4.1) (3 years)
License GPL-3
Depends
Imports Biobase, bit64, chron, data.table, doParallel, DT, enviPat, foreach, ggplot2, graphics, grDevices, ggpubr, gridExtra, Hmisc, methods, minpack.lm, MSnbase, parallel, plotly, rhdf5, rlang, Rcpp, shiny, shinyscreenshot, signal, scales, stats, utils
System Requirements
URL
Bug Reports https://github.com/camilleroquencourt/ptairMS/issues
See More
Suggests knitr, rmarkdown, BiocStyle, testthat (>= 2.1.0), ptairData, ropls
Linking To Rcpp
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ptairMS_1.4.1.tar.gz
Windows Binary ptairMS_1.4.1.zip
macOS Binary (x86_64) ptairMS_1.4.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/ptairMS
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ptairMS
Bioc Package Browser https://code.bioconductor.org/browse/ptairMS/
Package Short Url https://bioconductor.org/packages/ptairMS/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.15 Source Archive