UniProt.ws

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see UniProt.ws.

R Interface to UniProt Web Services


Bioconductor version: 3.15

A collection of functions for retrieving, processing and repackaging the UniProt web services.

Author: Marc Carlson [aut], Csaba Ortutay [ctb], Marcel Ramos [ctb], Bioconductor Package Maintainer [aut, cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("UniProt.ws")):

Installation

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("UniProt.ws")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("UniProt.ws")
UniProt.ws: A package for retrieving data from the UniProt web service PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Annotation, BioCarta, GO, Infrastructure, KEGG, Software
Version 2.36.5
In Bioconductor since BioC 2.12 (R-3.0) (11 years)
License Artistic License 2.0
Depends methods, utils, RSQLite, BiocGenerics(>= 0.13.8)
Imports AnnotationDbi, BiocFileCache, cellxgenedp, jsonlite, httr, httpcache, progress
System Requirements
URL
See More
Suggests RUnit, BiocStyle, knitr
Linking To
Enhances
Depends On Me
Imports Me dagLogo, drugTargetInteractions
Suggests Me cleaver, qPLEXanalyzer
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package UniProt.ws_2.36.5.tar.gz
Windows Binary UniProt.ws_2.36.5.zip
macOS Binary (x86_64) UniProt.ws_2.36.5.tgz
Source Repository git clone https://git.bioconductor.org/packages/UniProt.ws
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/UniProt.ws
Bioc Package Browser https://code.bioconductor.org/browse/UniProt.ws/
Package Short Url https://bioconductor.org/packages/UniProt.ws/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.15 Source Archive