MultiBaC

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see MultiBaC.

Multiomic Batch effect Correction


Bioconductor version: 3.15

MultiBaC is a strategy to correct batch effects from multiomic datasets distributed across different labs or data acquisition events. MultiBaC is the first Batch effect correction algorithm that dealing with batch effect correction in multiomics datasets. MultiBaC is able to remove batch effects across different omics generated within separate batches provided that at least one common omic data type is included in all the batches considered.

Author: person("Manuel", "Ugidos", email = "manuelugidos@gmail.com"), person("Sonia", "Tarazona", email = "sotacam@gmail.com"), person("María José", "Nueda", email = "mjnueda@ua.es")

Maintainer: The package maintainer <manuelugidos at gmail.com>

Citation (from within R, enter citation("MultiBaC")):

Installation

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MultiBaC")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MultiBaC")
MultiBaC HTML R Script
Reference Manual PDF

Details

biocViews BatchEffect, DataRepresentation, GeneExpression, PrincipalComponent, Software, StatisticalMethod, Transcription
Version 1.6.0
In Bioconductor since BioC 3.12 (R-4.0) (3.5 years)
License GPL-3
Depends
Imports Matrix, ggplot2, MultiAssayExperiment, ropls, graphics, methods, plotrix, grDevices, pcaMethods
System Requirements
URL
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Suggests knitr, rmarkdown, BiocStyle, devtools
Linking To
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Depends On Me
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MultiBaC_1.6.0.tar.gz
Windows Binary MultiBaC_1.6.0.zip (64-bit only)
macOS Binary (x86_64) MultiBaC_1.6.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MultiBaC
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MultiBaC
Bioc Package Browser https://code.bioconductor.org/browse/MultiBaC/
Package Short Url https://bioconductor.org/packages/MultiBaC/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.15 Source Archive