MOGAMUN
This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see MOGAMUN.
MOGAMUN: A Multi-Objective Genetic Algorithm to Find Active Modules in Multiplex Biological Networks
Bioconductor version: 3.15
MOGAMUN is a multi-objective genetic algorithm that identifies active modules in a multiplex biological network. This allows analyzing different biological networks at the same time. MOGAMUN is based on NSGA-II (Non-Dominated Sorting Genetic Algorithm, version II), which we adapted to work on networks.
Author: Elva-María Novoa-del-Toro [aut, cre]
Maintainer: Elva-María Novoa-del-Toro <elvanov at hotmail.com>
citation("MOGAMUN")
):
Installation
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MOGAMUN")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MOGAMUN")
Finding active modules with MOGAMUN | HTML | R Script |
Reference Manual | ||
NEWS | Text | |
LICENSE | Text |
Details
biocViews | BiomedicalInformatics, Clustering, DifferentialExpression, GraphAndNetwork, Network, Software, SystemsBiology, Transcriptomics |
Version | 1.6.0 |
In Bioconductor since | BioC 3.12 (R-4.0) (3.5 years) |
License | GPL-3 + file LICENSE |
Depends | |
Imports | stats, utils, RCy3, stringr, graphics, grDevices, RUnit, BiocParallel, igraph |
System Requirements | |
URL | https://github.com/elvanov/MOGAMUN |
See More
Suggests | knitr, markdown |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | MOGAMUN_1.6.0.tar.gz |
Windows Binary | MOGAMUN_1.6.0.zip |
macOS Binary (x86_64) | MOGAMUN_1.6.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/MOGAMUN |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MOGAMUN |
Bioc Package Browser | https://code.bioconductor.org/browse/MOGAMUN/ |
Package Short Url | https://bioconductor.org/packages/MOGAMUN/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.15 | Source Archive |