ENmix

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see ENmix.

Quality control and analysis tools for Illumina DNA methylation BeadChip


Bioconductor version: 3.15

Tool kits for quanlity control, analysis and visulization of Illumina DNA methylation arrays.

Author: Zongli Xu [cre, aut], Liang Niu [aut], Jack Taylor [ctb]

Maintainer: Zongli Xu <xuz at niehs.nih.gov>

Citation (from within R, enter citation("ENmix")):

Installation

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ENmix")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ENmix")
ENmix User's Guide PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews BatchEffect, DNAMethylation, DataImport, DifferentialMethylation, Epigenetics, ImmunoOncology, MethylationArray, Microarray, MultiChannel, Normalization, OneChannel, Preprocessing, PrincipalComponent, QualityControl, Regression, Software, TwoChannel
Version 1.32.0
In Bioconductor since BioC 3.1 (R-3.2) (9 years)
License Artistic-2.0
Depends R (>= 3.5.0), parallel, doParallel, foreach, SummarizedExperiment, stats
Imports grDevices, graphics, preprocessCore, matrixStats, methods, utils, geneplotter, impute, minfi, RPMM, illuminaio, dynamicTreeCut, IRanges, gtools, Biobase, ExperimentHub, AnnotationHub, genefilter, gplots, quadprog, S4Vectors
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Suggests minfiData, RUnit, BiocGenerics
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ENmix_1.32.0.tar.gz
Windows Binary ENmix_1.32.0.zip
macOS Binary (x86_64) ENmix_1.32.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ENmix
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ENmix
Bioc Package Browser https://code.bioconductor.org/browse/ENmix/
Package Short Url https://bioconductor.org/packages/ENmix/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.15 Source Archive