BiocDockerManager

This package is for version 3.15 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see BiocDockerManager.

Access Bioconductor docker images


Bioconductor version: 3.15

Package works analogous to BiocManager but for docker images. Use the BiocDockerManager package to install and manage docker images provided by the Bioconductor project. A convenient package to install images, update images and find which Bioconductor based docker images are available.

Author: Bioconductor Package Maintainer [cre], Nitesh Turaga [aut]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("BiocDockerManager")):

Installation

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BiocDockerManager")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BiocDockerManager")
BiocDockerManager Vignette HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Infrastructure, Software, ThirdPartyClient
Version 1.8.1
In Bioconductor since BioC 3.11 (R-4.0) (4 years)
License Artistic-2.0
Depends R (>= 4.1)
Imports httr, whisker, readr, dplyr, utils, methods, memoise
System Requirements docker
URL
Bug Reports https://github.com/Bioconductor/BiocDockerManager/issues
See More
Suggests BiocStyle, knitr, rmarkdown, testthat (>= 2.1.0)
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BiocDockerManager_1.8.1.tar.gz
Windows Binary BiocDockerManager_1.8.1.zip
macOS Binary (x86_64) BiocDockerManager_1.8.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/BiocDockerManager
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BiocDockerManager
Bioc Package Browser https://code.bioconductor.org/browse/BiocDockerManager/
Package Short Url https://bioconductor.org/packages/BiocDockerManager/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.15 Source Archive