davidTiling

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see davidTiling.

Data and analysis scripts for David, Huber et al. yeast tiling array paper


Bioconductor version: 3.14

This package contains the data for the paper by L. David et al. in PNAS 2006 (PMID 16569694): 8 CEL files of Affymetrix genechips, an ExpressionSet object with the raw feature data, a probe annotation data structure for the chip and the yeast genome annotation (GFF file) that was used. In addition, some custom-written analysis functions are provided, as well as R scripts in the scripts directory.

Author: Wolfgang Huber <huber at ebi.ac.uk>, Joern Toedling <toedling at ebi.ac.uk>

Maintainer: Wolfgang Huber <huber at ebi.ac.uk>

Citation (from within R, enter citation("davidTiling")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("davidTiling")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews ExperimentData, Genome, MicroarrayData, ReproducibleResearch, Saccharomyces_cerevisiae_Data
Version 1.34.0
License LGPL
Depends R (>= 2.10), Biobase(>= 2.5.5), tilingArray, GO.db
Imports
System Requirements
URL http://www.ebi.ac.uk/huber
See More
Suggests
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package davidTiling_1.34.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/davidTiling
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/davidTiling
Package Short Url https://bioconductor.org/packages/davidTiling/
Package Downloads Report Download Stats