STexampleData

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see STexampleData.

Collection of spatially resolved transcriptomics datasets in SpatialExperiment Bioconductor format


Bioconductor version: 3.14

Collection of spatially resolved transcriptomics datasets in SpatialExperiment Bioconductor format, for use in examples, demonstrations, tutorials, and other purposes. The datasets have been sourced from various publicly available sources, and cover several technological platforms.

Author: Lukas M. Weber [aut, cre]

Maintainer: Lukas M. Weber <lukas.weber.edu at gmail.com>

Citation (from within R, enter citation("STexampleData")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("STexampleData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("STexampleData")
STexampleData package overview HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews ExperimentData, ExperimentHub, ExpressionData, Homo_sapiens_Data, Mus_musculus_Data, ReproducibleResearch, SingleCellData
Version 1.2.0
License MIT + file LICENSE
Depends ExperimentHub, SpatialExperiment
Imports utils
System Requirements
URL https://github.com/lmweber/STexampleData
Bug Reports https://github.com/lmweber/STexampleData/issues
See More
Suggests BiocStyle, knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me ggspavis
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package STexampleData_1.2.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/STexampleData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/STexampleData
Package Short Url https://bioconductor.org/packages/STexampleData/
Package Downloads Report Download Stats