---
title: "RTCGA package workflow"
subtitle: "[rtcga.github.io/RTCGA/](https://rtcga.github.io/RTCGA/)"
author: "Marcin Kosinski"
date: "2016-03-23"
output:
  html_document:
    theme: readable
    highlight: tango
    fig_width: 17
    fig_height: 10
    toc: false
vignette: >
  %\VignetteIndexEntry{Integrating TCGA Data - RTCGA Workflow}
  %\VignetteEngine{knitr::rmarkdown}
---

![Workflow of RTCGA package](https://raw.githubusercontent.com/RTCGA/RTCGA/master/RTCGA_workflow_ver3.png)

## Data packages submitted to Bioconductor

- [RTCGA.mutations](http://bioconductor.org/packages/RTCGA.mutations.html)
- [RTCGA.rnaseq](http://bioconductor.org/packages/RTCGA.rnaseq.html)
- [RTCGA.clinical](http://bioconductor.org/packages/RTCGA.clinical.html)
- [RTCGA.PANCAN12](http://bioconductor.org/packages/RTCGA.PANCAN12/)
- [RTCGA.mRNA](http://bioconductor.org/packages/RTCGA.mRNA/)
- [RTCGA.miRNASeq](http://bioconductor.org/packages/RTCGA.miRNASeq/)
- [RTCGA.RPPA](http://bioconductor.org/packages/RTCGA.RPPA/)
- [RTCGA.CNV](http://bioconductor.org/packages/RTCGA.CNV/)
- [RTCGA.methylation](http://bioconductor.org/packages/RTCGA.methylation/)