Changes in version 3.14                         

NEW FUNCTIONS

  - sampleSwaps Given a list BAM files, the function genotypes known
    SNPs and identifies potentially related samples.

BUG FIXES

  - Return mutCountMatrix output as a matrix Issue: 769

ENHANCEMENTS

  - Added showPct argument to oncoplot. Issue: Issue: 771
  - Silently return sample order from oncoplot and coOncoplots Issue:
    771

                       Changes in version 2.10.05                       

  - Added PALB2 protein structure. Issue: 677

BUG FIXES

  - annovarToMaf struggles with Variant_Type. Issue: 803
  - lollipopPlot2 and Domain Details for Further Analysis Issue: 794
  - coOncoplot Ignores Annotation Colours. Issue: 786
  - subsetMaf Lost Columns if clinQuery Result is One Row. Issue: 785