tweeDEseq
This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see tweeDEseq.
RNA-seq data analysis using the Poisson-Tweedie family of distributions
Bioconductor version: 3.14
Differential expression analysis of RNA-seq using the Poisson-Tweedie family of distributions.
Author: Juan R Gonzalez <jrgonzalez at creal.cat> and Mikel Esnaola <mesnaola at creal.cat> (with contributions from Robert Castelo <robert.castelo at upf.edu>)
Maintainer: Juan R Gonzalez <jrgonzalez at creal.cat>
citation("tweeDEseq")):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("tweeDEseq")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("tweeDEseq")| tweeDEseq: analysis of RNA-seq data using the Poisson-Tweedie family of distributions | R Script | |
| Reference Manual |
Details
| biocViews | DifferentialExpression, ImmunoOncology, RNASeq, Sequencing, Software, StatisticalMethod |
| Version | 1.40.0 |
| In Bioconductor since | BioC 2.9 (R-2.14) (12.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.12.0) |
| Imports | MASS, limma, edgeR, parallel, cqn |
| System Requirements | |
| URL | http://www.creal.cat/jrgonzalez/software.htm |
See More
| Suggests | tweeDEseqCountData, xtable |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | ptmixed |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | tweeDEseq_1.40.0.tar.gz |
| Windows Binary | tweeDEseq_1.40.0.zip (32- & 64-bit) |
| macOS 10.13 (High Sierra) | tweeDEseq_1.40.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/tweeDEseq |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/tweeDEseq |
| Bioc Package Browser | https://code.bioconductor.org/browse/tweeDEseq/ |
| Package Short Url | https://bioconductor.org/packages/tweeDEseq/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.14 | Source Archive |