Menu

pathRender

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see pathRender.

Render molecular pathways


Bioconductor version: 3.14

build graphs from pathway databases, render them by Rgraphviz.

Author: Li Long <lilong at isb-sib.ch>

Maintainer: Vince Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("pathRender")):

Installation

To install this package, start R (version "4.1") and enter: 


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("pathRender")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pathRender")
pathRender overview PDF R Script
pathway graphs colored by expression map PDF R Script
Reference Manual PDF
NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews GraphAndNetwork, Pathways, Software, Visualization
Version 1.62.0
In Bioconductor since BioC 1.8 (R-2.3) (18 years)
License LGPL
Depends graph, Rgraphviz, RColorBrewer, cMAP, AnnotationDbi, methods, stats4
Imports
System Requirements
URL http://www.bioconductor.org
See More
Suggests ALL, hgu95av2.db
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package pathRender_1.62.0.tar.gz
Windows Binary pathRender_1.62.0.zip
macOS 10.13 (High Sierra) pathRender_1.62.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/pathRender
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/pathRender
Bioc Package Browser https://code.bioconductor.org/browse/pathRender/
Package Short Url https://bioconductor.org/packages/pathRender/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.14 Source Archive