pageRank

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see pageRank.

Temporal and Multiplex PageRank for Gene Regulatory Network Analysis


Bioconductor version: 3.14

Implemented temporal PageRank analysis as defined by Rozenshtein and Gionis. Implemented multiplex PageRank as defined by Halu et al. Applied temporal and multiplex PageRank in gene regulatory network analysis.

Author: Hongxu Ding [aut, cre, ctb, cph]

Maintainer: Hongxu Ding <hd2326 at columbia.edu>

Citation (from within R, enter citation("pageRank")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("pageRank")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pageRank")
introduction.pdf PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews GeneTarget, Network, Software, StatisticalMethod
Version 1.4.0
In Bioconductor since BioC 3.12 (R-4.0) (3.5 years)
License GPL-2
Depends R (>= 4.0)
Imports GenomicRanges, igraph, motifmatchr, stats, utils, grDevices, graphics
System Requirements
URL https://github.com/hd2326/pageRank
Bug Reports https://github.com/hd2326/pageRank/issues
See More
Suggests bcellViper, BSgenome.Hsapiens.UCSC.hg19, JASPAR2018, TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db, TFBSTools, GenomicFeatures, annotate
Linking To
Enhances
Depends On Me
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package pageRank_1.4.0.tar.gz
Windows Binary pageRank_1.4.0.zip (32- & 64-bit)
macOS 10.13 (High Sierra) pageRank_1.4.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/pageRank
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/pageRank
Bioc Package Browser https://code.bioconductor.org/browse/pageRank/
Package Short Url https://bioconductor.org/packages/pageRank/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.14 Source Archive