pRolocGUI

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see pRolocGUI.

Interactive visualisation of spatial proteomics data


Bioconductor version: 3.14

The package pRolocGUI comprises functions to interactively visualise organelle (spatial) proteomics data on the basis of pRoloc, pRolocdata and shiny.

Author: Lisa Breckels [aut], Thomas Naake [aut], Laurent Gatto [aut, cre]

Maintainer: Laurent Gatto <laurent.gatto at uclouvain.be>

Citation (from within R, enter citation("pRolocGUI")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("pRolocGUI")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pRolocGUI")
pRolocGUI - Interactive visualisation of spatial proteomics data HTML R Script
Reference Manual PDF
pRoloc, pRolocdata and pRolocGUI Video

Details

biocViews GUI, Proteomics, Software, Visualization
Version 2.4.0
In Bioconductor since BioC 3.0 (R-3.1) (9.5 years)
License GPL-2
Depends methods, R (>= 3.1.0), pRoloc(>= 1.27.6), Biobase, MSnbase(>= 2.1.11)
Imports shiny (>= 0.9.1), scales, dplyr, DT (>= 0.1.40), graphics, utils, ggplot2, shinydashboardPlus, colourpicker, shinyhelper, shinyWidgets, shinyjs, colorspace, shinydashboard, stats, grDevices, grid, BiocGenerics
System Requirements
URL http://ComputationalProteomicsUnit.github.io/pRolocGUI/
Bug Reports https://github.com/ComputationalProteomicsUnit/pRolocGUI/issues
See More
Suggests pRolocdata, knitr, BiocStyle(>= 2.5.19), rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package pRolocGUI_2.4.0.tar.gz
Windows Binary pRolocGUI_2.4.0.zip (32- & 64-bit)
macOS 10.13 (High Sierra) pRolocGUI_2.4.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/pRolocGUI
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/pRolocGUI
Bioc Package Browser https://code.bioconductor.org/browse/pRolocGUI/
Package Short Url https://bioconductor.org/packages/pRolocGUI/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.14 Source Archive