oppti

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see oppti.

Outlier Protein and Phosphosite Target Identifier


Bioconductor version: 3.14

The aim of oppti is to analyze protein (and phosphosite) expressions to find outlying markers for each sample in the given cohort(s) for the discovery of personalized actionable targets.

Author: Abdulkadir Elmas

Maintainer: Abdulkadir Elmas <abdulkadir.elmas at mssm.edu>

Citation (from within R, enter citation("oppti")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("oppti")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("oppti")
Outlier Protein and Phosphosite Target Identifier HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews BiomedicalInformatics, DifferentialExpression, GeneExpression, GeneTarget, Network, Proteomics, Regression, Software
Version 1.8.0
In Bioconductor since BioC 3.10 (R-3.6) (4.5 years)
License MIT
Depends R (>= 3.5)
Imports limma, stats, reshape, ggplot2, grDevices, RColorBrewer, pheatmap, knitr, methods, devtools, parallelDist
System Requirements
URL https://github.com/Huang-lab/oppti
Bug Reports https://github.com/Huang-lab/oppti/issues
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package oppti_1.8.0.tar.gz
Windows Binary oppti_1.8.0.zip
macOS 10.13 (High Sierra) oppti_1.8.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/oppti
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/oppti
Bioc Package Browser https://code.bioconductor.org/browse/oppti/
Package Short Url https://bioconductor.org/packages/oppti/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.14 Source Archive