TRESS
This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see TRESS.
Toolbox for mRNA epigenetics sequencing analysis
Bioconductor version: 3.14
This package is devoted to analyzing MeRIP-seq data. Current functionality is for detection of transcriptome-wide m6A methylation regions. The method is based on hierarchical negative binomial models.
Author: Zhenxing Guo [aut, cre], Hao Wu [ctb]
Maintainer: Zhenxing Guo <zhenxing.guo at emory.edu>
citation("TRESS")):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TRESS")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TRESS")| The TRESS User's Guide | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | Epigenetics, PeakDetection, RNASeq, Software |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.14 (R-4.1) (2.5 years) |
| License | GPL-3 + file LICENSE |
| Depends | R (>= 4.1.0), parallel, S4Vectors |
| Imports | utils, rtracklayer, Matrix, matrixStats, stats, methods, graphics, GenomicRanges, GenomicFeatures, IRanges, Rsamtools, AnnotationDbi |
| System Requirements | |
| URL |
See More
| Suggests | knitr, rmarkdown, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | TRESS_1.0.0.tar.gz |
| Windows Binary | TRESS_1.0.0.zip |
| macOS 10.13 (High Sierra) | TRESS_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/TRESS |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TRESS |
| Bioc Package Browser | https://code.bioconductor.org/browse/TRESS/ |
| Package Short Url | https://bioconductor.org/packages/TRESS/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.14 | Source Archive |