savR

This package is for version 3.13 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see savR.

Parse and analyze Illumina SAV files


Bioconductor version: 3.13

Parse Illumina Sequence Analysis Viewer (SAV) files, access data, and generate QC plots.

Author: R. Brent Calder

Maintainer: R. Brent Calder <brent.calder at einstein.yu.edu>

Citation (from within R, enter citation("savR")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("savR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("savR")
Using savR PDF R Script
Reference Manual PDF

Details

biocViews Sequencing, Software
Version 1.30.0
In Bioconductor since BioC 2.14 (R-3.1) (10 years)
License AGPL-3
Depends ggplot2
Imports methods, reshape2, scales, gridExtra, XML
System Requirements
URL https://github.com/bcalder/savR
Bug Reports https://github.com/bcalder/savR/issues
See More
Suggests Cairo, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package savR_1.30.0.tar.gz
Windows Binary savR_1.30.0.zip (32- & 64-bit)
macOS 10.13 (High Sierra) savR_1.30.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/savR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/savR
Bioc Package Browser https://code.bioconductor.org/browse/savR/
Package Short Url https://bioconductor.org/packages/savR/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.13 Source Archive