metapod
This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see metapod.
Meta-Analyses on P-Values of Differential Analyses
Bioconductor version: 3.13
Implements a variety of methods for combining p-values in differential analyses of genome-scale datasets. Functions can combine p-values across different tests in the same analysis (e.g., genomic windows in ChIP-seq, exons in RNA-seq) or for corresponding tests across separate analyses (e.g., replicated comparisons, effect of different treatment conditions). Support is provided for handling log-transformed input p-values, missing values and weighting where appropriate.
Author: Aaron Lun [aut, cre]
Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>
citation("metapod")):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("metapod")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("metapod")| Meta-analysis strategies | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DifferentialPeakCalling, MultipleComparison, Software |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.13 (R-4.1) (3 years) |
| License | GPL-3 |
| Depends | |
| Imports | Rcpp |
| System Requirements | C++11 |
| URL |
See More
| Suggests | testthat, knitr, BiocStyle, rmarkdown |
| Linking To | Rcpp |
| Enhances | |
| Depends On Me | |
| Imports Me | csaw, mumosa, scran |
| Suggests Me | TSCAN |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | metapod_1.0.0.tar.gz |
| Windows Binary | metapod_1.0.0.zip |
| macOS 10.13 (High Sierra) | metapod_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/metapod |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/metapod |
| Bioc Package Browser | https://code.bioconductor.org/browse/metapod/ |
| Package Short Url | https://bioconductor.org/packages/metapod/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.13 | Source Archive |