matter

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see matter.

A framework for rapid prototyping with file-based data structures


Bioconductor version: 3.13

Memory-efficient reading, writing, and manipulation of structured binary data as file-based vectors, matrices, arrays, lists, and data frames.

Author: Kylie A. Bemis <k.bemis at northeastern.edu>

Maintainer: Kylie A. Bemis <k.bemis at northeastern.edu>

Citation (from within R, enter citation("matter")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("matter")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("matter")
matter: Rapid prototyping with data on disk PDF R Script
matter: Supplementary 1 - Simulations and comparative benchmarks PDF R Script
matter: Supplementary 2 - 3D mass spectrometry imaging case study PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataRepresentation, Infrastructure, Software
Version 1.18.0
In Bioconductor since BioC 3.4 (R-3.3) (7.5 years)
License Artistic-2.0
Depends R (>= 3.5), BiocParallel, Matrix, methods, stats, biglm
Imports BiocGenerics, ProtGenerics, digest, irlba, utils
System Requirements
URL https://github.com/kuwisdelu/matter
See More
Suggests BiocStyle, testthat
Linking To
Enhances
Depends On Me
Imports Me Cardinal
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package matter_1.18.0.tar.gz
Windows Binary matter_1.18.0.zip
macOS 10.13 (High Sierra) matter_1.18.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/matter
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/matter
Bioc Package Browser https://code.bioconductor.org/browse/matter/
Package Short Url https://bioconductor.org/packages/matter/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.13 Source Archive