lmdme

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see lmdme.

Linear Model decomposition for Designed Multivariate Experiments


Bioconductor version: 3.13

linear ANOVA decomposition of Multivariate Designed Experiments implementation based on limma lmFit. Features: i)Flexible formula type interface, ii) Fast limma based implementation, iii) p-values for each estimated coefficient levels in each factor, iv) F values for factor effects and v) plotting functions for PCA and PLS.

Author: Cristobal Fresno and Elmer A. Fernandez

Maintainer: Cristobal Fresno <cfresno at bdmg.com.ar>

Citation (from within R, enter citation("lmdme")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("lmdme")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("lmdme")
lmdme: linear model framework for PCA/PLS analysis of ANOVA decomposition on Designed Multivariate Experiments in R PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Cancer, DifferentialExpression, ExperimentData, Microarray, OneChannel, Software, TwoChannel, Visualization
Version 1.34.0
In Bioconductor since BioC 2.11 (R-2.15) (11.5 years)
License GPL (>=2)
Depends R (>= 2.14.1), pls, stemHypoxia
Imports stats, methods, limma
System Requirements
URL http://www.bdmg.com.ar/?page_id=38
See More
Suggests
Linking To
Enhances parallel
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package lmdme_1.34.0.tar.gz
Windows Binary lmdme_1.34.0.zip (32- & 64-bit)
macOS 10.13 (High Sierra) lmdme_1.34.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/lmdme
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/lmdme
Bioc Package Browser https://code.bioconductor.org/browse/lmdme/
Package Short Url https://bioconductor.org/packages/lmdme/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.13 Source Archive