gaia

This package is for version 3.13 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see gaia.

GAIA: An R package for genomic analysis of significant chromosomal aberrations.


Bioconductor version: 3.13

This package allows to assess the statistical significance of chromosomal aberrations.

Author: Sandro Morganella et al.

Maintainer: S. Morganella <sandro at ebi.ac.uk>

Citation (from within R, enter citation("gaia")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("gaia")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gaia")
gaia PDF R Script
Reference Manual PDF

Details

biocViews CopyNumberVariation, Software, aCGH
Version 2.36.0
In Bioconductor since BioC 2.8 (R-2.13) (13 years)
License GPL-2
Depends R (>= 2.10)
Imports
System Requirements
URL
See More
Suggests
Linking To
Enhances
Depends On Me
Imports Me TCGAWorkflow
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package gaia_2.36.0.tar.gz
Windows Binary gaia_2.36.0.zip
macOS 10.13 (High Sierra) gaia_2.36.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/gaia
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/gaia
Bioc Package Browser https://code.bioconductor.org/browse/gaia/
Package Short Url https://bioconductor.org/packages/gaia/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.13 Source Archive