drugTargetInteractions

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see drugTargetInteractions.

Drug-Target Interactions


Bioconductor version: 3.13

Provides utilities for identifying drug-target interactions for sets of small molecule or gene/protein identifiers. The required drug-target interaction information is obained from a local SQLite instance of the ChEMBL database. ChEMBL has been chosen for this purpose, because it provides one of the most comprehensive and best annotatated knowledge resources for drug-target information available in the public domain.

Author: Thomas Girke [cre, aut]

Maintainer: Thomas Girke <thomas.girke at ucr.edu>

Citation (from within R, enter citation("drugTargetInteractions")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("drugTargetInteractions")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("drugTargetInteractions")
Drug-Target Interactions HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews BiomedicalInformatics, Cheminformatics, Metabolomics, Pharmacogenetics, Pharmacogenomics, Proteomics, Software
Version 1.0.2
In Bioconductor since BioC 3.13 (R-4.1) (3 years)
License Artistic-2.0
Depends methods, R (>= 4.1)
Imports utils, RSQLite, UniProt.ws, biomaRt, ensembldb, BiocFileCache, dplyr, rappdirs, AnnotationFilter, S4Vectors
System Requirements
URL https://github.com/girke-lab/drugTargetInteractions
Bug Reports https://github.com/girke-lab/drugTargetInteractions
See More
Suggests RUnit, BiocStyle, knitr, rmarkdown, ggplot2, reshape2, DT, EnsDb.Hsapiens.v86
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package drugTargetInteractions_1.0.2.tar.gz
Windows Binary drugTargetInteractions_1.0.0.zip
macOS 10.13 (High Sierra) drugTargetInteractions_1.0.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/drugTargetInteractions
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/drugTargetInteractions
Bioc Package Browser https://code.bioconductor.org/browse/drugTargetInteractions/
Package Short Url https://bioconductor.org/packages/drugTargetInteractions/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.13 Source Archive