copa

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see copa.

Functions to perform cancer outlier profile analysis.


Bioconductor version: 3.13

COPA is a method to find genes that undergo recurrent fusion in a given cancer type by finding pairs of genes that have mutually exclusive outlier profiles.

Author: James W. MacDonald

Maintainer: James W. MacDonald <jmacdon at u.washington.edu>

Citation (from within R, enter citation("copa")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("copa")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("copa")
copa Overview PDF R Script
Reference Manual PDF

Details

biocViews DifferentialExpression, OneChannel, Software, TwoChannel, Visualization
Version 1.60.0
In Bioconductor since BioC 1.8 (R-2.3) (18 years)
License Artistic-2.0
Depends Biobase, methods
Imports
System Requirements
URL
See More
Suggests colonCA
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package copa_1.60.0.tar.gz
Windows Binary copa_1.60.0.zip (32- & 64-bit)
macOS 10.13 (High Sierra) copa_1.60.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/copa
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/copa
Bioc Package Browser https://code.bioconductor.org/browse/copa/
Package Short Url https://bioconductor.org/packages/copa/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.13 Source Archive