TCseq

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see TCseq.

Time course sequencing data analysis


Bioconductor version: 3.13

Quantitative and differential analysis of epigenomic and transcriptomic time course sequencing data, clustering analysis and visualization of temporal patterns of time course data.

Author: Mengjun Wu <minervajunjun at gmail.com>, Lei Gu <leigu at broadinstitute.org>

Maintainer: Mengjun Wu <minervajunjun at gmail.com>

Citation (from within R, enter citation("TCseq")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TCseq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TCseq")
TCseq Vignette PDF R Script
Reference Manual PDF

Details

biocViews ChIPSeq, Clustering, DifferentialExpression, Epigenetics, RNASeq, Sequencing, Software, TimeCourse, Visualization
Version 1.16.0
In Bioconductor since BioC 3.5 (R-3.4) (7 years)
License GPL (>= 2)
Depends R (>= 3.4)
Imports edgeR, BiocGenerics, reshape2, GenomicRanges, IRanges, SummarizedExperiment, GenomicAlignments, Rsamtools, e1071, cluster, ggplot2, grid, grDevices, stats, utils, methods, locfit
System Requirements
URL
See More
Suggests testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TCseq_1.16.0.tar.gz
Windows Binary TCseq_1.16.0.zip
macOS 10.13 (High Sierra) TCseq_1.16.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/TCseq
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TCseq
Bioc Package Browser https://code.bioconductor.org/browse/TCseq/
Package Short Url https://bioconductor.org/packages/TCseq/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.13 Source Archive