Rtpca

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see Rtpca.

Thermal proximity co-aggregation with R


Bioconductor version: 3.13

R package for performing thermal proximity co-aggregation analysis with thermal proteome profiling datasets to analyse protein complex assembly and (differential) protein-protein interactions across conditions.

Author: Nils Kurzawa [aut, cre], André Mateus [aut], Mikhail M. Savitski [aut]

Maintainer: Nils Kurzawa <nils.kurzawa at embl.de>

Citation (from within R, enter citation("Rtpca")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Rtpca")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Rtpca")
Introduction to Rtpca HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataImport, Proteomics, Software
Version 1.2.0
In Bioconductor since BioC 3.12 (R-4.0) (3.5 years)
License GPL-3
Depends R (>= 4.0.0), stats, dplyr, tidyr
Imports Biobase, methods, ggplot2, pROC, fdrtool, splines, utils, tibble
System Requirements
URL
Bug Reports https://support.bioconductor.org/
See More
Suggests knitr, BiocStyle, TPP, testthat, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Rtpca_1.2.0.tar.gz
Windows Binary Rtpca_1.2.0.zip
macOS 10.13 (High Sierra) Rtpca_1.2.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Rtpca
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Rtpca
Bioc Package Browser https://code.bioconductor.org/browse/Rtpca/
Package Short Url https://bioconductor.org/packages/Rtpca/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.13 Source Archive