RNAither

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.13 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see RNAither.

Statistical analysis of high-throughput RNAi screens


Bioconductor version: 3.13

RNAither analyzes cell-based RNAi screens, and includes quality assessment, customizable normalization and statistical tests, leading to lists of significant genes and biological processes.

Author: Nora Rieber and Lars Kaderali, University of Heidelberg, Viroquant Research Group Modeling, Im Neuenheimer Feld 267, 69120 Heidelberg, Germany

Maintainer: Lars Kaderali <lars.kaderali at uni-greifswald.de>

Citation (from within R, enter citation("RNAither")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RNAither")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews Annotation, CellBasedAssays, GO, ImmunoOncology, Preprocessing, QualityControl, Software, Visualization
Version 2.40.0
In Bioconductor since BioC 2.3 (R-2.8) (15.5 years)
License Artistic-2.0
Depends R (>= 2.10), topGO, RankProd, prada
Imports geneplotter, limma, biomaRt, car, splots, methods
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/RNAither
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RNAither
Package Short Url https://bioconductor.org/packages/RNAither/
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Old Source Packages for BioC 3.13 Source Archive