Onassis

This package is for version 3.13 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see Onassis.

OnASSIs Ontology Annotation and Semantic SImilarity software


Bioconductor version: 3.13

A package that allows the annotation of text with ontology terms (mainly from OBO ontologies) and the computation of semantic similarity measures based on the structure of the ontology between different annotated samples.

Author: Eugenia Galeota

Maintainer: Eugenia Galeota <eugenia.galeota at gmail.com>

Citation (from within R, enter citation("Onassis")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Onassis")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews Annotation, Clustering, DataImport, GeneTarget, Network, Software
Version 1.14.0
In Bioconductor since BioC 3.6 (R-3.4) (6.5 years)
License GPL-2
Depends R (>= 4.0), rJava, OnassisJavaLibs
Imports GEOmetadb, RSQLite, data.table, methods, tools, utils, AnnotationDbi, RCurl, stats, DT, data.table, knitr, Rtsne, dendextend, clusteval, ggplot2, ggfortify
System Requirements Java (>= 1.8)
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Suggests BiocStyle, rmarkdown, htmltools, org.Hs.eg.db, gplots, GenomicRanges, kableExtra
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary Onassis_1.14.0.zip
macOS 10.13 (High Sierra) Onassis_1.14.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Onassis
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Onassis
Bioc Package Browser https://code.bioconductor.org/browse/Onassis/
Package Short Url https://bioconductor.org/packages/Onassis/
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Old Source Packages for BioC 3.13 Source Archive