MetaVolcanoR

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see MetaVolcanoR.

Gene Expression Meta-analysis Visualization Tool


Bioconductor version: 3.13

MetaVolcanoR combines differential gene expression results. It implements three strategies to summarize differential gene expression from different studies. i) Random Effects Model (REM) approach, ii) a p-value combining-approach, and iii) a vote-counting approach. In all cases, MetaVolcano exploits the Volcano plot reasoning to visualize the gene expression meta-analysis results.

Author: Cesar Prada [aut, cre], Diogenes Lima [aut], Helder Nakaya [aut, ths]

Maintainer: Cesar Prada <cesar.prada at usp.br>

Citation (from within R, enter citation("MetaVolcanoR")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MetaVolcanoR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MetaVolcanoR")
MetaVolcanoR inputs: differential expression examples HTML R Script
MetaVolcanoR: Differential expression meta-analysis tool HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DifferentialExpression, GeneExpression, RNASeq, Software, Transcriptomics, mRNAMicroarray
Version 1.6.0
In Bioconductor since BioC 3.10 (R-3.6) (4.5 years)
License GPL-3
Depends R (>= 3.6.0)
Imports methods, data.table, dplyr, tidyr, plotly, ggplot2, cowplot, parallel, metafor, metap, rlang, topconfects, grDevices, graphics, stats, htmlwidgets
System Requirements
URL
See More
Suggests knitr, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MetaVolcanoR_1.6.0.tar.gz
Windows Binary MetaVolcanoR_1.6.0.zip
macOS 10.13 (High Sierra) MetaVolcanoR_1.6.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MetaVolcanoR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MetaVolcanoR
Bioc Package Browser https://code.bioconductor.org/browse/MetaVolcanoR/
Package Short Url https://bioconductor.org/packages/MetaVolcanoR/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.13 Source Archive