GCSscore

This package is for version 3.13 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see GCSscore.

GCSscore: an R package for microarray analysis for Affymetrix/Thermo Fisher arrays


Bioconductor version: 3.13

For differential expression analysis of 3'IVT and WT-style microarrays from Affymetrix/Thermo-Fisher. Based on S-score algorithm originally described by Zhang et al 2002.

Author: Guy M. Harris & Shahroze Abbas & Michael F. Miles

Maintainer: Guy M. Harris <harrisgm at vcu.edu>

Citation (from within R, enter citation("GCSscore")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GCSscore")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GCSscore")
SScore primer PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataImport, DifferentialExpression, Microarray, OneChannel, ProprietaryPlatforms, Software
Version 1.6.0
In Bioconductor since BioC 3.10 (R-3.6) (4.5 years)
License GPL (>=3)
Depends R (>= 3.6)
Imports BiocManager, Biobase, utils, methods, RSQLite, devtools, dplR, stringr, graphics, stats, affxparser, data.table
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Suggests siggenes, GEOquery, R.utils
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GCSscore_1.6.0.tar.gz
Windows Binary GCSscore_1.6.0.zip
macOS 10.13 (High Sierra) GCSscore_1.6.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GCSscore
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GCSscore
Bioc Package Browser https://code.bioconductor.org/browse/GCSscore/
Package Short Url https://bioconductor.org/packages/GCSscore/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.13 Source Archive