ExperimentSubset

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see ExperimentSubset.

Manages subsets of data with Bioconductor Experiment objects


Bioconductor version: 3.13

Experiment objects such as the SummarizedExperiment or SingleCellExperiment are data containers for one or more matrix-like assays along with the associated row and column data. Often only a subset of the original data is needed for down-stream analysis. For example, filtering out poor quality samples will require excluding some columns before analysis. The ExperimentSubset object is a container to efficiently manage different subsets of the same data without having to make separate objects for each new subset.

Author: Irzam Sarfraz [aut, cre] , Muhammad Asif [aut, ths] , Joshua D. Campbell [aut]

Maintainer: Irzam Sarfraz <irzam9095 at gmail.com>

Citation (from within R, enter citation("ExperimentSubset")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ExperimentSubset")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ExperimentSubset")
An introduction to ExperimentSubset class HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews DataImport, DataRepresentation, Infrastructure, Software
Version 1.2.0
In Bioconductor since BioC 3.12 (R-4.0) (3.5 years)
License MIT + file LICENSE
Depends R (>= 4.0.0), SummarizedExperiment, SingleCellExperiment, SpatialExperiment, TreeSummarizedExperiment
Imports methods, Matrix, S4Vectors
System Requirements
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Suggests BiocStyle, knitr, rmarkdown, testthat, covr, stats, scran, scater, scds, TENxPBMCData, airway
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ExperimentSubset_1.2.0.tar.gz
Windows Binary ExperimentSubset_1.2.0.zip (32- & 64-bit)
macOS 10.13 (High Sierra) ExperimentSubset_1.2.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ExperimentSubset
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ExperimentSubset
Bioc Package Browser https://code.bioconductor.org/browse/ExperimentSubset/
Package Short Url https://bioconductor.org/packages/ExperimentSubset/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.13 Source Archive