DiffLogo

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see DiffLogo.

DiffLogo: A comparative visualisation of biooligomer motifs

Bioconductor version: 3.13

DiffLogo is an easy-to-use tool to visualize motif differences.

Author: c( person("Martin", "Nettling", role = c("aut", "cre"), email = "martin.nettling@informatik.uni-halle.de"), person("Hendrik", "Treutler", role = c("aut", "cre"), email = "hendrik.treutler@ipb-halle.de"), person("Jan", "Grau", role = c("aut", "ctb"), email = "grau@informatik.uni-halle.de"), person("Andrey", "Lando", role = c("aut", "ctb"), email = "dronte@autosome.ru"), person("Jens", "Keilwagen", role = c("aut", "ctb"), email = "jens.keilwagen@julius-kuehn.de"), person("Stefan", "Posch", role = "aut", email = "posch@informatik.uni-halle.de"), person("Ivo", "Grosse", role = "aut", email = "grosse@informatik.uni-halle.de"))

Maintainer: Hendrik Treutler<hendrik.treutler at gmail.com>

Citation (from within R, enter citation("DiffLogo")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DiffLogo")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DiffLogo")

Basics of the DiffLogo package	PDF	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Alignment, MotifAnnotation, MultipleComparison, SequenceMatching, Software, Visualization
Version	2.16.0
In Bioconductor since	BioC 3.2 (R-3.2) (8.5 years)
License	GPL (>= 2)
Depends	R (>= 3.4), stats, cba
Imports	grDevices, graphics, utils, tools
System Requirements
URL	https://github.com/mgledi/DiffLogo/
Bug Reports	https://github.com/mgledi/DiffLogo/issues

Suggests	knitr, testthat, seqLogo, MotifDb
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	DiffLogo_2.16.0.tar.gz
Windows Binary	DiffLogo_2.16.0.zip
macOS 10.13 (High Sierra)	DiffLogo_2.16.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/DiffLogo
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/DiffLogo
Bioc Package Browser	https://code.bioconductor.org/browse/DiffLogo/
Package Short Url	https://bioconductor.org/packages/DiffLogo/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.13	Source Archive