DBChIP
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.13 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see DBChIP.
Differential Binding of Transcription Factor with ChIP-seq
Bioconductor version: 3.13
DBChIP detects differentially bound sharp binding sites across multiple conditions, with or without matching control samples.
Author: Kun Liang
Maintainer: Kun Liang <kliang at stat.wisc.edu>
citation("DBChIP")):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("DBChIP")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | ChIPSeq, Genetics, Sequencing, Software, Transcription |
| Version | 1.36.0 |
| In Bioconductor since | BioC 2.11 (R-2.15) (11.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.15.0), edgeR, DESeq |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | ShortRead, BiocGenerics |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary | |
| macOS 10.13 (High Sierra) | |
| Source Repository | git clone https://git.bioconductor.org/packages/DBChIP |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/DBChIP |
| Package Short Url | https://bioconductor.org/packages/DBChIP/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.13 | Source Archive |