CNORdt

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see CNORdt.

Add-on to CellNOptR: Discretized time treatments


Bioconductor version: 3.13

This add-on to the package CellNOptR handles time-course data, as opposed to steady state data in CellNOptR. It scales the simulation step to allow comparison and model fitting for time-course data. Future versions will optimize delays and strengths for each edge.

Author: A. MacNamara

Maintainer: A. MacNamara <aidan.macnamara at ebi.ac.uk>

Citation (from within R, enter citation("CNORdt")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CNORdt")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CNORdt")
Using multiple time points to train logic models to data PDF R Script
Reference Manual PDF

Details

biocViews CellBasedAssays, CellBiology, ImmunoOncology, Proteomics, Software, TimeCourse
Version 1.34.0
In Bioconductor since BioC 2.11 (R-2.15) (11.5 years)
License GPL-2
Depends R (>= 1.8.0), CellNOptR(>= 0.99), abind
Imports
System Requirements
URL
See More
Suggests
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CNORdt_1.34.0.tar.gz
Windows Binary CNORdt_1.34.0.zip (32- & 64-bit)
macOS 10.13 (High Sierra) CNORdt_1.34.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/CNORdt
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CNORdt
Bioc Package Browser https://code.bioconductor.org/browse/CNORdt/
Package Short Url https://bioconductor.org/packages/CNORdt/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.13 Source Archive