BRAIN

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see BRAIN.

Baffling Recursive Algorithm for Isotope distributioN calculations


Bioconductor version: 3.13

Package for calculating aggregated isotopic distribution and exact center-masses for chemical substances (in this version composed of C, H, N, O and S). This is an implementation of the BRAIN algorithm described in the paper by J. Claesen, P. Dittwald, T. Burzykowski and D. Valkenborg.

Author: Piotr Dittwald, with contributions of Dirk Valkenborg and Jurgen Claesen

Maintainer: Piotr Dittwald <piotr.dittwald at mimuw.edu.pl>

Citation (from within R, enter citation("BRAIN")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BRAIN")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BRAIN")
BRAIN Usage PDF R Script
Reference Manual PDF

Details

biocViews ImmunoOncology, MassSpectrometry, Proteomics, Software
Version 1.38.0
In Bioconductor since BioC 2.10 (R-2.15) (12 years)
License GPL-2
Depends R (>= 2.8.1), PolynomF, Biostrings, lattice
Imports
System Requirements
URL
See More
Suggests
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me cleaver, RforProteomics, synapter
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BRAIN_1.38.0.tar.gz
Windows Binary BRAIN_1.38.0.zip
macOS 10.13 (High Sierra) BRAIN_1.38.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/BRAIN
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BRAIN
Bioc Package Browser https://code.bioconductor.org/browse/BRAIN/
Package Short Url https://bioconductor.org/packages/BRAIN/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.13 Source Archive