sigaR
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.12 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see sigaR.
Statistics for Integrative Genomics Analyses in R
Bioconductor version: 3.12
Facilitates the joint analysis of high-throughput data from multiple molecular levels. Contains functions for manipulation of objects, various analysis types, and some visualization.
Author: Wessel N. van Wieringen <w.vanwieringen at vumc.nl>
Maintainer: Wessel N. van Wieringen <w.vanwieringen at vumc.nl>
citation("sigaR")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("sigaR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | DifferentialExpression, GeneExpression, Microarray, Pathways, Software, aCGH |
| Version | 1.38.0 |
| In Bioconductor since | BioC 2.10 (R-2.15) (12 years) |
| License | GPL (>= 2) |
| Depends | Biobase, CGHbase, methods, mvtnorm |
| Imports | corpcor (>= 1.6.2), graphics, igraph, limma, marray, MASS, penalized, quadprog, snowfall, stats |
| System Requirements | |
| URL | http://www.few.vu.nl/~wvanwie |
See More
| Suggests | CGHcall |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary | |
| macOS 10.13 (High Sierra) | |
| Source Repository | git clone https://git.bioconductor.org/packages/sigaR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/sigaR |
| Package Short Url | https://bioconductor.org/packages/sigaR/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.12 | Source Archive |