qcmetrics

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see qcmetrics.

A Framework for Quality Control


Bioconductor version: 3.12

The package provides a framework for generic quality control of data. It permits to create, manage and visualise individual or sets of quality control metrics and generate quality control reports in various formats.

Author: Laurent Gatto [aut, cre]

Maintainer: Laurent Gatto <laurent.gatto at uclouvain.be>

Citation (from within R, enter citation("qcmetrics")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("qcmetrics")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("qcmetrics")
Index file for the qcmetrics package vignette HTML R Script
The 'qcmetrics' infrastructure for quality control and reporting PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews ImmunoOncology, MassSpectrometry, Microarray, Proteomics, QualityControl, ReportWriting, Software, Visualization
Version 1.28.0
In Bioconductor since BioC 2.13 (R-3.0) (10.5 years)
License GPL-2
Depends R (>= 3.3)
Imports Biobase, methods, knitr, tools, Nozzle.R1, xtable, pander, S4Vectors
System Requirements
URL https://github.com/lgatto/qcmetrics
Bug Reports https://github.com/lgatto/qcmetrics/issues
See More
Suggests affy, MSnbase, ggplot2, lattice, yaqcaffy, MAQCsubsetAFX, RforProteomics, AnnotationDbi, mzR, hgu133plus2cdf, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me MSstatsQC
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package qcmetrics_1.28.0.tar.gz
Windows Binary qcmetrics_1.28.0.zip
macOS 10.13 (High Sierra) qcmetrics_1.28.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/qcmetrics
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/qcmetrics
Bioc Package Browser https://code.bioconductor.org/browse/qcmetrics/
Package Short Url https://bioconductor.org/packages/qcmetrics/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.12 Source Archive