miRmine

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see miRmine.

Data package with miRNA-seq datasets from miRmine database as RangedSummarizedExperiment


Bioconductor version: 3.12

miRmine database is a collection of expression profiles from different publicly available miRNA-seq datasets, Panwar et al (2017) miRmine: A Database of Human miRNA Expression, prepared with this data package as RangedSummarizedExperiment.

Author: Dusan Randjelovic [aut, cre]

Maintainer: Dusan Randjelovic <dusan.randjelovic at sbgenomics.com>

Citation (from within R, enter citation("miRmine")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("miRmine")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("miRmine")
miRmine HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews ExpressionData, Homo_sapiens_Data, RNASeqData, SequencingData, Software
Version 1.12.0
In Bioconductor since BioC 3.6 (R-3.4) (6.5 years)
License GPL (>= 3)
Depends R (>= 3.4), SummarizedExperiment
Imports
System Requirements
URL
See More
Suggests BiocStyle, knitr, rmarkdown, DESeq2
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package miRmine_1.12.0.tar.gz
Windows Binary miRmine_1.12.0.zip
macOS 10.13 (High Sierra) miRmine_1.12.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/miRmine
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/miRmine
Bioc Package Browser https://code.bioconductor.org/browse/miRmine/
Package Short Url https://bioconductor.org/packages/miRmine/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.12 Source Archive