lfa

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see lfa.

Logistic Factor Analysis for Categorical Data


Bioconductor version: 3.12

LFA is a method for a PCA analogue on Binomial data via estimation of latent structure in the natural parameter.

Author: Wei Hao, Minsun Song, John D. Storey

Maintainer: Wei Hao <whao at princeton.edu>, John D. Storey <jstorey at princeton.edu>

Citation (from within R, enter citation("lfa")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("lfa")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("lfa")
lfa Package PDF R Script
Reference Manual PDF

Details

biocViews DimensionReduction, PrincipalComponent, SNP, Software
Version 1.20.0
In Bioconductor since BioC 3.2 (R-3.2) (8.5 years)
License GPL-3
Depends R (>= 3.2)
Imports corpcor
System Requirements
URL https://github.com/StoreyLab/lfa
Bug Reports https://github.com/StoreyLab/lfa/issues
See More
Suggests knitr, ggplot2
Linking To
Enhances
Depends On Me
Imports Me gcatest
Suggests Me genio, popkin
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package lfa_1.20.0.tar.gz
Windows Binary lfa_1.20.0.zip (32- & 64-bit)
macOS 10.13 (High Sierra) lfa_1.20.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/lfa
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/lfa
Bioc Package Browser https://code.bioconductor.org/browse/lfa/
Package Short Url https://bioconductor.org/packages/lfa/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.12 Source Archive