derfinderHelper

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see derfinderHelper.

derfinder helper package


Bioconductor version: 3.12

Helper package for speeding up the derfinder package when using multiple cores.

Author: Leonardo Collado-Torres [aut, cre] , Andrew E. Jaffe [aut] , Jeffrey T. Leek [aut, ths]

Maintainer: Leonardo Collado-Torres <lcolladotor at gmail.com>

Citation (from within R, enter citation("derfinderHelper")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("derfinderHelper")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("derfinderHelper")
Introduction to derfinderHelper HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DifferentialExpression, ImmunoOncology, RNASeq, Sequencing, Software
Version 1.24.1
In Bioconductor since BioC 3.0 (R-3.1) (9.5 years)
License Artistic-2.0
Depends R (>= 3.2.2)
Imports IRanges(>= 1.99.27), Matrix, methods, S4Vectors(>= 0.2.2)
System Requirements
URL https://github.com/leekgroup/derfinderHelper
Bug Reports https://support.bioconductor.org/t/derfinderHelper
See More
Suggests sessioninfo, knitr (>= 1.6), BiocStyle(>= 2.5.19), RefManageR, rmarkdown (>= 0.3.3), testthat, covr
Linking To
Enhances
Depends On Me
Imports Me derfinder
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package derfinderHelper_1.24.1.tar.gz
Windows Binary derfinderHelper_1.24.1.zip
macOS 10.13 (High Sierra) derfinderHelper_1.24.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/derfinderHelper
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/derfinderHelper
Bioc Package Browser https://code.bioconductor.org/browse/derfinderHelper/
Package Short Url https://bioconductor.org/packages/derfinderHelper/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.12 Source Archive