cytolib

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see cytolib.

C++ infrastructure for representing and interacting with the gated cytometry data


Bioconductor version: 3.12

This package provides the core data structure and API to represent and interact with the gated cytometry data.

Author: Mike Jiang

Maintainer: Mike Jiang <wjiang2 at fhcrc.org>, Jake Wagner <jpwagner at fhcrc.org>

Citation (from within R, enter citation("cytolib")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("cytolib")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cytolib")
Using cytolib HTML R Script
Reference Manual PDF
LICENSE Text

Details

biocViews DataImport, DataRepresentation, FlowCytometry, ImmunoOncology, Preprocessing, Software
Version 2.2.1
In Bioconductor since BioC 3.6 (R-3.4) (6.5 years)
License file LICENSE
Depends R (>= 3.4)
Imports RcppParallel, RProtoBufLib
System Requirements GNU make, C++11
URL
See More
Suggests knitr
Linking To Rcpp, BH (>= 1.72.0-2), RProtoBufLib(>= 1.99.8), Rhdf5lib, RcppArmadillo, RcppParallel (>= 4.4.2-1)
Enhances
Depends On Me
Imports Me CytoML, flowCore, flowWorkspace
Suggests Me
Links To Me CytoML, flowCore, flowWorkspace
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package cytolib_2.2.1.tar.gz
Windows Binary cytolib_2.2.1.zip (32- & 64-bit)
macOS 10.13 (High Sierra) cytolib_2.2.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/cytolib
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/cytolib
Bioc Package Browser https://code.bioconductor.org/browse/cytolib/
Package Short Url https://bioconductor.org/packages/cytolib/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.12 Source Archive