crisprseekplus
This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see crisprseekplus.
crisprseekplus
Bioconductor version: 3.12
Bioinformatics platform containing interface to work with offTargetAnalysis and compare2Sequences in the CRISPRseek package, and GUIDEseqAnalysis.
Author: Sophie Wigmore <Sophie.Wigmore at umassmed.edu>, Alper Kucukural <alper.kucukural at umassmed.edu>, Lihua Julie Zhu <julie.zhu at umassmed.edu>, Michael Brodsky <Michael.Brodsky at umassmed.edu>, Manuel Garber <Manuel.Garber at umassmed.edu>
Maintainer: Alper Kucukural <alper.kucukural at umassmed.edu>
citation("crisprseekplus")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("crisprseekplus")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("crisprseekplus")| DEBrowser Vignette | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | GeneRegulation, SequenceMatching, Software |
| Version | 1.16.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (7.5 years) |
| License | GPL-3 + file LICENSE |
| Depends | R (>= 3.3.0), shiny, shinyjs, CRISPRseek |
| Imports | DT, utils, GUIDEseq, GenomicRanges, GenomicFeatures, BiocManager, BSgenome, AnnotationDbi, hash |
| System Requirements | |
| URL | https://github.com/UMMS-Biocore/crisprseekplus |
| Bug Reports | https://github.com/UMMS-Biocore/crisprseekplus/issues/new |
See More
| Suggests | testthat, rmarkdown, knitr, R.rsp |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | crisprseekplus_1.16.0.tar.gz |
| Windows Binary | crisprseekplus_1.16.0.zip |
| macOS 10.13 (High Sierra) | crisprseekplus_1.16.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/crisprseekplus |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/crisprseekplus |
| Bioc Package Browser | https://code.bioconductor.org/browse/crisprseekplus/ |
| Package Short Url | https://bioconductor.org/packages/crisprseekplus/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.12 | Source Archive |