crisprseekplus

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see crisprseekplus.

crisprseekplus


Bioconductor version: 3.12

Bioinformatics platform containing interface to work with offTargetAnalysis and compare2Sequences in the CRISPRseek package, and GUIDEseqAnalysis.

Author: Sophie Wigmore <Sophie.Wigmore at umassmed.edu>, Alper Kucukural <alper.kucukural at umassmed.edu>, Lihua Julie Zhu <julie.zhu at umassmed.edu>, Michael Brodsky <Michael.Brodsky at umassmed.edu>, Manuel Garber <Manuel.Garber at umassmed.edu>

Maintainer: Alper Kucukural <alper.kucukural at umassmed.edu>

Citation (from within R, enter citation("crisprseekplus")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("crisprseekplus")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("crisprseekplus")
DEBrowser Vignette HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews GeneRegulation, SequenceMatching, Software
Version 1.16.0
In Bioconductor since BioC 3.4 (R-3.3) (7.5 years)
License GPL-3 + file LICENSE
Depends R (>= 3.3.0), shiny, shinyjs, CRISPRseek
Imports DT, utils, GUIDEseq, GenomicRanges, GenomicFeatures, BiocManager, BSgenome, AnnotationDbi, hash
System Requirements
URL https://github.com/UMMS-Biocore/crisprseekplus
Bug Reports https://github.com/UMMS-Biocore/crisprseekplus/issues/new
See More
Suggests testthat, rmarkdown, knitr, R.rsp
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package crisprseekplus_1.16.0.tar.gz
Windows Binary crisprseekplus_1.16.0.zip
macOS 10.13 (High Sierra) crisprseekplus_1.16.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/crisprseekplus
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/crisprseekplus
Bioc Package Browser https://code.bioconductor.org/browse/crisprseekplus/
Package Short Url https://bioconductor.org/packages/crisprseekplus/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.12 Source Archive