SSPA

This package is for version 3.12 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see SSPA.

General Sample Size and Power Analysis for Microarray and Next-Generation Sequencing Data


Bioconductor version: 3.12

General Sample size and power analysis for microarray and next-generation sequencing data.

Author: Maarten van Iterson

Maintainer: Maarten van Iterson <mviterson at gmail.com>

Citation (from within R, enter citation("SSPA")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SSPA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SSPA")
Power and sample size analysis, Microarray data, RNAseq data HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews GeneExpression, ImmunoOncology, Microarray, RNASeq, Software, StatisticalMethod
Version 2.30.0
In Bioconductor since BioC 2.4 (R-2.9) (15 years)
License GPL (>= 2)
Depends R (>= 2.12), methods
Imports graphics, stats, qvalue, lattice, limma
System Requirements
URL http://www.humgen.nl/MicroarrayAnalysisGroup.html
See More
Suggests BiocStyle, knitr, rmarkdown, genefilter, edgeR, DESeq
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SSPA_2.30.0.tar.gz
Windows Binary SSPA_2.30.0.zip (32- & 64-bit)
macOS 10.13 (High Sierra) SSPA_2.30.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/SSPA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SSPA
Bioc Package Browser https://code.bioconductor.org/browse/SSPA/
Package Short Url https://bioconductor.org/packages/SSPA/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.12 Source Archive