ProteomicsAnnotationHubData

This package is for version 3.12 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see ProteomicsAnnotationHubData .

Transform public proteomics data resources into Bioconductor Data Structures


Bioconductor version: 3.12

These recipes convert a variety and a growing number of public proteomics data sets into easily-used standard Bioconductor data structures.

Author: Gatto Laurent [aut, cre], Sonali Arora [aut]

Maintainer: Laurent Gatto <lg390 at cam.ac.uk>

Citation (from within R, enter citation("ProteomicsAnnotationHubData")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ProteomicsAnnotationHubData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ProteomicsAnnotationHubData")
Proteomics Data in Annotation Hub HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataImport, Proteomics, Software
Version 1.20.0
In Bioconductor since BioC 3.2 (R-3.2) (8.5 years)
License Artistic-2.0
Depends AnnotationHub(>= 2.1.45), AnnotationHubData
Imports mzR(>= 2.3.2), MSnbase, Biostrings, GenomeInfoDb, utils, Biobase, BiocManager, RCurl
System Requirements
URL https://github.com/lgatto/ProteomicsAnnotationHubData
Bug Reports https://github.com/lgatto/ProteomicsAnnotationHubData/issues
See More
Suggests knitr, BiocStyle, rmarkdown, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ProteomicsAnnotationHubData_1.20.0.tar.gz
Windows Binary ProteomicsAnnotationHubData_1.20.0.zip
macOS 10.13 (High Sierra) ProteomicsAnnotationHubData_1.20.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ProteomicsAnnotationHubData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ProteomicsAnnotationHubData
Bioc Package Browser https://code.bioconductor.org/browse/ProteomicsAnnotationHubData/
Package Short Url https://bioconductor.org/packages/ProteomicsAnnotationHubData/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.12 Source Archive